rs6282638 SNP Detail

Summary

• ID
  rs6282638
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185151891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACTATCTATC
  TATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC ATTCTATCTA TACCTGAAGC
  AGTTTCAAAG GATCTTTCAC TCAGGTTTAA TTTAAGACCT ACTGTTTTTC AGATAGAGTT
  CTAGACCCTA CAAATGCAAG GTCTCCTTAA ACCTGAAGGG CTTCGGTCCC CTCAGAGATA
  S
  ATCACAATGC ATAAGACTTG AATATGTAAG GAGTCTGGCA TGTAGCTCCT TCTTCAGTTC
  CCTGATGGAA ACCTCAAACT TTATCCCAAA GCCAGCAATC TGAGCAGCCC TTAACCTAGA
  GTAACAAGAA TCTGAGGTGA GGCCTGCAGG GGATTCTGAT ATATTCTCTA GTTGCAGGCA
  GAGTACAGGT TCACTAGGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8688501	WI_WGS_1_186535943	WI	MOUSE	f	SNP	G	C
ss320175601	CHEV_1_187243573	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6282638					SNP	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185151891 () rs orientation: forward

Symbol	Name	Function Class
Eprs1	glutamyl-prolyl-tRNA synthetase 1	Intron
Rr425382	regulatory region 425382	1472 bp distal
Rr425383	regulatory region 425383	1185 bp proximal
Tssr10610	transcription start site region 10610	1400 bp downstream