rs6283123 SNP Detail

Summary

• ID
  rs6283123
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26198080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGAAA TATAGATTTG
  AAAAGATGTT AACTCAGAAG TACCAGAGGG GAGTGTTTGC TAGCAGCAGG AAGGATTAGA
  ACTGCCCAGG CTTTGAGCTA GTCAAGGCAT TTAAATTTTA CTGGTGTGTA TGTGTGTGTC
  TGTCTGTCTG TCTTTCATTT GAGAAACCAG ATAGCTCCTG GGTGAGTACA TGCCTGAGAC
  M
  TGTCAGGAGC ACAGAGCAGG TTAGCTAAAC TCACTGCAAC ATGGTCCTGC AAGGATATCT
  TTTTTTCTTG TTTCTTTCTT TTTTTTTTTT TTTCGAGACA GGGTTTCTCT GTGTAGCCTT
  GGCTGTCCTG GAACTCACTC TGTAGACCAG GCTGGCCTCA AACTCAGAAA TCTGCCTGCC
  TCTGCCTCTG CCTCTGCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8688988	WI_WGS_2_26594324	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6283123					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26198080 () rs orientation: forward

Symbol	Name	Function Class
Rr372940	regulatory region 372940	within coordinates
Rr553269	regulatory region 553269	1369 bp proximal