rs6283558 SNP Detail

Summary

• ID
  rs6283558
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4094014 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GTGTGTGGTG GCCCGCTTTT
  GACTCCCTTT TCTTCTCGGG GGAGAGGCCC AATTCAGAGA TCAAGAGTTG TCTTAATAGC
  TCCCAACAGG CCCAGAACCT CAGTGATGAA AACTGGGGCC TGAGGGAGCT GACAGTAGTT
  GAGAATGTGA CGCTACAGTG CATGCATATA CACCTGTCCC AGGTTCTACG GATGCAGATG
  S
  ATCCCAGATA CAGCCAGGAA CTGAGAGGGG AGTAGATGAA CACAATAAGA AAGGGCAGGC
  TCAGCCTGGG GTCCAATAGG GACTGGGAAT CCAGTAGTCC CTTAGCCCCC ACACATGTCT
  GTGCTCTATA GAAGGGGCAG AAAGGCCAGG ACTGTGCTGT GGGAAAGGGG AATGGTCAGT
  ATTTTATGAT CCACAGGGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8689425	WI_WGS_19_6779703	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6283558					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4094014 () rs orientation: reverse

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	1793 bp upstream
Rr357953	regulatory region 357953	414 bp distal
Rr363269	regulatory region 363269	1413 bp distal
Rr363270	regulatory region 363270	1986 bp proximal
Rr394053	regulatory region 394053	1283 bp upstream
Tssr157438	transcription start site region 157438	1772 bp upstream
Tssr157439	transcription start site region 157439	1741 bp upstream