rs6283657 SNP Detail

Summary

• ID
  rs6283657
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4093949 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AGTTGTCTTA ATAGCTCCCA
  ACAGGCCCAG AACCTCAGTG ATGAAAACTG GGGCCTGAGG GAGCTGACAG TAGTTGAGAA
  TGTGACGCTA CAGTGCATGC ATATACACCT GTCCCAGGTT CTACGGATGC AGATGCATCC
  CAGATACAGC CAGGAACTGA GAGGGGAGTA GATGAACACA ATAAGAAAGG GCAGGCTCAG
  S
  CTGGGGTCCA ATAGGGACTG GGAATCCAGT AGTCCCTTAG CCCCCACACA TGTCTGTGCT
  CTATAGAAGG GGCAGAAAGG CCAGGACTGT GCTGTGGGAA AGGGGAATGG TCAGTATTTT
  ATGATCCACA GGGCACAGAG TCAAAGCCTG GGGAGGGGCT AGGGGCAGGG TTGGGCGTGG
  AAAATGTTTC TGCATGAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8689524	WI_WGS_19_6779768	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6283657					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4093949 () rs orientation: reverse

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	1728 bp upstream
Rr357953	regulatory region 357953	349 bp distal
Rr363269	regulatory region 363269	1348 bp distal
Rr394053	regulatory region 394053	1348 bp upstream
Tssr157438	transcription start site region 157438	1707 bp upstream
Tssr157439	transcription start site region 157439	1676 bp upstream