rs6284348 SNP Detail

Summary

• ID
  rs6284348
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143606821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGAG CCATAGATTT GGAACAGGGG
  M
  GTACTGAGTC CGTCTGCCCA GCCCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss8690220	WI_WGS_5_142747866	WI	MOUSE	f	SNP			A	C
ss45750556	mCV25076177	ABI	CRAMUS_MOUSE	f	SNP	C	C	A		C
ss144601665	ENSMUSSNP1561337	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C		C
ss321708419	CHEV_5_144381935	CHEVERUD	SCREENING_POP	f	SNP						C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs6284348					SNP	C	C	A	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143606821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16995	CpG island 16995	1108 bp proximal
Cyth3	cytohesin 3	1381 bp upstream
Gm73103	predicted gene, 73103	within coordinates
Rr124733	regulatory region 124733	979 bp proximal
Tssr49666	transcription start site region 49666	1374 bp upstream
Tssr49667	transcription start site region 49667	1400 bp upstream
Tssr49668	transcription start site region 49668	1489 bp upstream