rs6285608 SNP Detail

Summary

• ID
  rs6285608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115218049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATGGGC GCTTTGTGTA
  TTCATAGTCA GTCAACCATA TCCTTGCCAG GGCATGGTGG TAAAGGTAGA GGCTGGGGAC
  CTCTCCCCAC CCCAGGCACT CCCTCAGAAG TGTGGGTAGA GGTGACAAGG AACAAGAGTG
  TATAGTGTGC TTCCTCATCC TTGAGGGTAC AGTCTAGGCC ATACTGTCCA GGTCTCCATC
  Y
  GACCACGAAG GAGCCCTGGC TTTCCTCACA AAGAGCCAGG GTGAGGAAGT TGAGGAAAGA
  GAAGGAAGGC AGAGTGGCTT AACTATTCCA GCATGTGGAG GAAGGAAAGG CAGGAAACCA
  CCCCTAGTGT GATGACGTCA TGATGATGTC ACTTGGGCCT ATGACTGTCG TGCGCAGTGC
  AAAGTGCTTC AGATGTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8691486	WI_WGS_11_116215618	WI	MOUSE	f	SNP							T		C
ss37248339	NES08518564	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6285608					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248339	NES08518564	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115218049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4123	CpG island 4123	1920 bp proximal
Otop2	otopetrin 2	within coordinates
Rr386706	regulatory region 386706	1070 bp downstream