rs6285663 SNP Detail

Summary

• ID
  rs6285663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69197014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTTCTG GAACTGAGCT
  GAAAGAGGCA TCAGGGTGCT TAGCTGAAGT GCCAGGGGGA GGGGGGTAGC GGGAGGGAGT
  GTGGAAAGTG GTCAGAGGCA AGGCAGAGAG CTTCCGGGCC GCCACAGGTG ATCGGTTAGT
  AAAGAGGTGG CGAGGGACTT TGGTGCGGGC CCCTGGGAGC GCAGGGGGGC AGCACTGTGT
  Y
  GGGGTGGGCC GTTCCCGGTC ACCTGCCCGC GGGGGCGGAG CGCGGCGCCC AGGCGCACCC
  GCCTCCCGCC TCTTGCTCCC GCCCCGGGAG GAAGCGGAGG GGCGCGGTGT AAACAGAGCG
  GCGGCCGTGA TGTCAGCCGG TCACATGGAG CCTCTTATGG CTCGGGATGG CTCTCGGCGG
  GCGGGCAGCT GCGGCAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	LG/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss8691541	WI_WGS_9_69889017	WI	MOUSE	f	SNP								C		T
ss24773000	Rora_JC9828_1	ROCHEBIO	RPAMM	r	SNP	G	G	G	G	G	G	G		G		G	G	A	G	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	LG/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs6285663					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69197014 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21987	CpG island 21987			within coordinates
Rora	RAR-related orphan receptor alpha			Intron
				mRNA-UTR
Rr682144	regulatory region 682144			40 bp distal
Rr682145	regulatory region 682145			within coordinates
Tssr85839	transcription start site region 85839			1328 bp downstream
Tssr85840	transcription start site region 85840			109 bp upstream
Tssr85841	transcription start site region 85841			133 bp upstream
Tssr85842	transcription start site region 85842			170 bp upstream
Tssr85843	transcription start site region 85843			177 bp upstream