rs6286848 SNP Detail

Summary

• ID
  rs6286848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31469668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAATCAT AAACTATTCT
  GAGAAAGGAG TTTATATAGC TTTTGTATCT TAAAACCAAG AGTAAAAGAA ATCACTTCAA
  CAACTTTACA TGGGTTCCTA GAATTAAAAA AAAAAAATCT TCCTAAAACA ACTGTGTAAA
  ATAAACAAAA ATACTCAAAA ACTATTTTTT TTCTGATCCC ACATAATCAG CAATAATCAC
  R
  AGGATAACAT AGACATTTAC CTGCCAAGGG TAGAAAAGGG GAGTCTGATC AAGAGGGACC
  CTCAGAGGAG CAACAATAAC CAGCTCAAAC AGGAGCCCGA GGAGCAGTGG GACGACCCCA
  GCCAGCAGCA CAGCAACTAT CAACGTCTTC ATTATCTAGC AGGAACAAGG CACACAATCA
  TTACAGAGAA TCTTTCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8692729	WI_WGS_15_31561289	WI	MOUSE	f	SNP								G		A
ss51630424	NES14594854	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	G		A		G	G	A	G	G	G	G	G
ss147445987	ENSMUSSNP1816020	ENSEMBL	ENSEMBL_Sanger	f	SNP		A									G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6286848					SNP	A	A	A	G	G	A	G	G	A	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630424	NES14594854	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31469668 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	1601 bp upstream
Tssr133931	transcription start site region 133931	1570 bp upstream
Tssr133932	transcription start site region 133932	1542 bp upstream