rs6287372 SNP Detail

Summary

• ID
  rs6287372
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69197371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTGTAAACAG
  AGCGGCGGCC GTGATGTCAG CCGGTCACAT GGAGCCTCTT ATGGCTCGGG ATGGCTCTCG
  GCGGGCGGGC AGCTGCGGCA GCTGCTGCTG TGGCTCGGGC GGCGGCGGCA AGAGGGGGCT
  CCGGGGTCGG ACGGTCGGCT CTCCCTGCGC TCTCCGCACC GCGGCGTAAA GGATGTATTT
  TGTGATCGCA GCGATGAAAG GTGAGCTCCG GGTGGCCCGC GGGGACTCGG GTGGACTGAC
  S
  GCTCCGGGGG GCGGGGAGGA GGGCGCGCAG GGGGAGGGGT GGGCGCGCCT GCCGGAGCTC
  ACGTACAGCT TGAGGGGCAG CCACTGGAAC CCAACGGGGT CTCCGGGGCC ACCGCAGCGT
  AGCCACTGGA GCNCGGAGGA GGGTTCGGCC TGCCGCGGGT CGGTGGAGCT AGACTCACGG
  GCCCGATCGC CCCTCCGGCG TCTTCTTAGC TGCTGTCACT CGTCTGGGTG CGCCTGACAC
  CCAGCGGGGC                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8693255	WI_WGS_9_69889374	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6287372					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69197371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21987	CpG island 21987	within coordinates
Rora	RAR-related orphan receptor alpha	Intron
Rr682144	regulatory region 682144	397 bp distal
Rr682145	regulatory region 682145	within coordinates
Tssr85839	transcription start site region 85839	1685 bp downstream
Tssr85840	transcription start site region 85840	240 bp downstream
Tssr85841	transcription start site region 85841	194 bp downstream
Tssr85842	transcription start site region 85842	182 bp downstream
Tssr85843	transcription start site region 85843	152 bp downstream