rs6287471 SNP Detail

Summary

• ID
  rs6287471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62174291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTTATGA ATGAAATAAA
  CAATGCTTAA GCAGATTACA GGATATGGAC TAGAAAGAGT AAGGAGAATG AAGTATGCAG
  CCTCAGAGGA GACCTCTGTC AGAAATATAA ATAGCCTGAT TATGAGGCTT CTTTGTAAGT
  AAAGATGTCT AGTGTGTCAT CTTTGTTACT TTTCTATCAA ATCTCAGAAA CATACATTAA
  R
  ACATGCAGAT ACAAATACAA CATGCCCCCT GCACATGCAA GCTTGCTAGT TAAGTTGAAA
  GTAGCAAGTA AGAGTAAAAC ATACACACAC ATAAATCTTG CAAAGCTGAA ACTTTGAATT
  CATTGTGTTT TGATCAGATA GTTTCAGATT TCACTGTAGT AATGATGACA TCTTACAAAA
  AAATGTATAT ATACTGCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8693355	WI_WGS_2_63057640	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6287471					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62174291 () rs orientation: forward

Symbol	Name	Function Class
Dpp4	dipeptidylpeptidase 4	Intron
Rr557853	regulatory region 557853	1652 bp distal
Tssr507	transcription start site region 507	410 bp upstream
Tssr24253	transcription start site region 24253	294 bp upstream
Tssr24254	transcription start site region 24254	279 bp upstream
Tssr24255	transcription start site region 24255	246 bp upstream
Tssr24256	transcription start site region 24256	208 bp upstream
Tssr24257	transcription start site region 24257	116 bp upstream
Tssr24258	transcription start site region 24258	20 bp downstream