rs6287591 SNP Detail

Summary

• ID
  rs6287591
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATCCTAA ATATCTGAGA
  TTTCTTGAAT TGCCTAGTGA CCTGTGGGAT GTACGTCAGA ATATTACCCA GAACTGAAGT
  TGTGTCCTTT GAACTTCAGC ATTGTAGAAC TATGAACCGT GGCTGTGTTA AAAATGATAC
  ATGTATTCAA ATATTTCCAC AGAATTTAAA GTTTGATTTT ATAATTAGTT TTTAAATTGC
  M
  AACCTTACAA AAATTTTCCA AAATTTACTT AGAAGCATTT CAGAGCTCTT TTCTTTCAAA
  GCTGAAGTCT ACCTTGCCTT CAGATTCATA ATCGTTCACT CTACTTTATA ACTAACTGTG
  TGCGTACACA CAACTATTTC TTTTTCTCTT TGCAGGTGCT GCAAACCAGG AAGGGGAAGT
  GTGTGGTTTA AGTTGCATAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8693475	WI_WGS_16_85338928	WI	MOUSE	f	SNP	A	C
ss325261449	CHEV_16_84714142	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6287591					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510785 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	243 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	562 bp downstream
Rr518521	regulatory region 518521	250 bp distal
Rr518522	regulatory region 518522	within coordinates
Tssr139173	transcription start site region 139173	305 bp upstream
Tssr139174	transcription start site region 139174	1088 bp upstream
Tssr139175	transcription start site region 139175	1176 bp upstream
Tssr139176	transcription start site region 139176	1712 bp upstream