rs6287995 SNP Detail

Summary

• ID
  rs6287995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31469872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACATAGA CATTTACCTG
  CCAAGGGTAG AAAAGGGGAG TCTGATCAAG AGGGACCCTC AGAGGAGCAA CAATAACCAG
  CTCAAACAGG AGCCCGAGGA GCAGTGGGAC GACCCCAGCC AGCAGCACAG CAACTATCAA
  CGTCTTCATT ATCTAGCAGG AACAAGGCAC ACAATCATTA CAGAGAATCT TTCCTCTTGA
  Y
  AAACTGTATT CTACTTTCAG GCTTGCTTTC CTCTTTGACC TGATATTTCA GTGGAATTTC
  TTTTTTTAAA GCATAGGTGT CCATGTGTAC ACATGAAAAT GGAGGCCAGA GGACAATCTT
  AAATGTCCTC CCCTCCTTTG ACAAAGAATG CCTCACTGGC ACAGAAGAGT AGACTGTTCA
  GCGAGTAAAC CCCAAGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8693879	WI_WGS_15_31561493	WI	MOUSE	f	SNP								T		C
ss51630421	NES14594856	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C		T	T	C	T	T	T	T	T
ss147445991	ENSMUSSNP4989258	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6287995					SNP	C	C	T	T	T	C	T	T	C	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630421	NES14594856	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31469872 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	1805 bp upstream
Tssr133931	transcription start site region 133931	1774 bp upstream
Tssr133932	transcription start site region 133932	1746 bp upstream