rs6288148 SNP Detail

Summary

• ID
  rs6288148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132647368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTTGCA GCCCTGACTA
  ATCCTTCTGC AACAGAGGCA AACGAAAGGC TTACTTCTTC CCAGGAACAG GTGTACACAC
  ACTCTTAGGA CAAGGAGAAA ATTTTAGTGA TGACACTTAA AGTGTAATTA CCAGCTGCAG
  AATGCCTTGG AACAAACATT AATCTCCTAA GAGTTAAGAG GCAGATTCCA TGCATTTCTG
  Y
  TTTTTAGCTG CTGGCTCCTC AGCCTTGTGT GGGTCTAAAG CGCCTGTGCA GGACTTGAGG
  CTGGGGTCTG CCCGAAGGCT GTCTGAGACA ACAGTGAACC CTGACAGAAG GTACCCTCCA
  CCGCCACTCA TCAATAATTT GGGATGACTC CGATCTGGCA GAACCTAACC AAGACAGAAA
  AAACGACACT TATGCATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8694032	WI_WGS_2_133809607	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6288148					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132647368 () rs orientation: forward

Symbol	Name	Function Class
Trmt6	tRNA methyltransferase 6	within coordinates