rs6288356 SNP Detail

Summary

• ID
  rs6288356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69197504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTTTGT GATCGCAGCG
  ATGAAAGGTG AGCTCCGGGT GGCCCGCGGG GACTCGGGTG GACTGACGGC TCCGGGGGGC
  GGGGAGGAGG GCGCGCAGGG GGAGGGGTGG GCGCGCCTGC CGGAGCTCAC GTACAGCTTG
  AGGGGCAGCC ACTGGAACCC AACGGGGTCT CCGGGGCCAC CGCAGCGTAG CCACTGGAGC
  Y
  CGGAGGAGGG TTCGGCCTGC CGCGGGTCGG TGGAGCTAGA CTCACGGGCC CGATCGCCCC
  TCCGGCGTCT TCTTAGCTGC TGTCACTCGT CTGGGTGCGC CTGACACCCA GCGGGGCTCC
  CCAAAGAAAG TTTGCCGAGA GTCGCAGCGC TTGGAACGCT CAGGGAGGAT CTGGCAACTG
  GGAGGAAGCT GGGGACATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8694240	WI_WGS_9_69889507	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6288356					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69197504 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21987	CpG island 21987			within coordinates
Rora	RAR-related orphan receptor alpha			Intron
				mRNA-UTR
Rr682144	regulatory region 682144			530 bp distal
Rr682145	regulatory region 682145			within coordinates
Tssr85839	transcription start site region 85839			1818 bp downstream
Tssr85840	transcription start site region 85840			373 bp downstream
Tssr85841	transcription start site region 85841			327 bp downstream
Tssr85842	transcription start site region 85842			315 bp downstream
Tssr85843	transcription start site region 85843			285 bp downstream