rs6288586 SNP Detail

Summary

• ID
  rs6288586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62174517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGCACA TGCAAGCTTG
  CTAGTTAAGT TGAAAGTAGC AAGTAAGAGT AAAACATACA CACACATAAA TCTTGCAAAG
  CTGAAACTTT GAATTCATTG TGTTTTGATC AGATAGTTTC AGATTTCACT GTAGTAATGA
  TGACATCTTA CAAAAAAATG TATATATACT GCTCAGAGGA ATATTACTCT TAGGATATTG
  Y
  ATTCAGTCAC AACAGAGAAA ATTCTGTGTT GACATTATTC TTGTTTTTCT CTCTTTTTAA
  TTCATTCTCC TGCAGAGAGT TTTTGGACAT CTTTGGAGAA TGAAAATGTC AGAGATGATT
  TTACTTGTTA TCGAAAAGCT TTAATTTAGT TTACAAGGTT TTTTTTCTCT TTTTTTTTTT
  TCCTCGACTA ATAGTGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8694471	WI_WGS_2_63057866	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6288586					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62174517 () rs orientation: forward

Symbol	Name	Function Class
Dpp4	dipeptidylpeptidase 4	Intron
Rr557853	regulatory region 557853	1878 bp distal
Tssr507	transcription start site region 507	636 bp upstream
Tssr24253	transcription start site region 24253	520 bp upstream
Tssr24254	transcription start site region 24254	505 bp upstream
Tssr24255	transcription start site region 24255	472 bp upstream
Tssr24256	transcription start site region 24256	434 bp upstream
Tssr24257	transcription start site region 24257	342 bp upstream
Tssr24258	transcription start site region 24258	199 bp upstream