rs6288728 SNP Detail

Summary

• ID
  rs6288728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79292735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCTCTA ATAATAAACA
  AATAGTTATA GGCAGGCAGA CATAATACAA ATATGACTTC ACTTTAGTCA TTTTGTCCCA
  CAACAATGTC ATAACAGAGG ATCTATTTGT ATCAGATTGC TTTTTTAAAA AAAATAATGT
  CCCAAGTTAT TGATAAGTAC CTCTTTTTTA TCCTGTGAGC ATATTGGTCC TCTGTGAGAT
  R
  CTCTGAGATT CTACTTCTCC AGTGACACAA CTCACAGTCC TTGGATTTTC CTCTTCTGGA
  CTAGGCAAGT CAGTACTGAA AAATTAAAAC ATAGCAGCGC TGGGAGGGAT GTGAATGCCA
  AAATCTATCC CAGAGGGAAC TGGCAACAAT TACCATCTTA GTGTGGAGTG AAGAGTTGTG
  AGGGTAGGCA CCCACAGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8694613	WI_WGS_2_80343063	WI	MOUSE	f	SNP							G		A
ss38186054	NES09241779	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6288728					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186054	NES09241779	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79292735 () rs orientation: forward

Symbol	Name	Function Class
Rr559993	regulatory region 559993	275 bp distal