rs6288774 SNP Detail

Summary

• ID
  rs6288774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79292765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGCAGA CATAATACAA
  ATATGACTTC ACTTTAGTCA TTTTGTCCCA CAACAATGTC ATAACAGAGG ATCTATTTGT
  ATCAGATTGC TTTTTTAAAA AAAATAATGT CCCAAGTTAT TGATAAGTAC CTCTTTTTTA
  TCCTGTGAGC ATATTGGTCC TCTGTGAGAT GCTCTGAGAT TCTACTTCTC CAGTGACACA
  R
  CTCACAGTCC TTGGATTTTC CTCTTCTGGA CTAGGCAAGT CAGTACTGAA AAATTAAAAC
  ATAGCAGCGC TGGGAGGGAT GTGAATGCCA AAATCTATCC CAGAGGGAAC TGGCAACAAT
  TACCATCTTA GTGTGGAGTG AAGAGTTGTG AGGGTAGGCA CCCACAGTTG CCTCCTCGGC
  ACTGGTGCCT TTGAGCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8694659	WI_WGS_2_80343093	WI	MOUSE	f	SNP							A		G
ss38186053	NES09241780	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6288774					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186053	NES09241780	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79292765 () rs orientation: forward

Symbol	Name	Function Class
Rr559993	regulatory region 559993	305 bp distal