rs6288937 SNP Detail

Summary

• ID
  rs6288937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:31470010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGTCTTCA TTATCTAGCA
  GGAACAAGGC ACACAATCAT TACAGAGAAT CTTTCCTCTT GATAAACTGT ATTCTACTTT
  CAGGCTTGCT TTCCTCTTTG ACCTGATATT TCAGTGGAAT TTCTTTTTTT AAAGCATAGG
  TGTCCATGTG TACACATGAA AATGGAGGCC AGAGGACAAT CTTAAATGTC CTCCCCTCCT
  Y
  TGACAAAGAA TGCCTCACTG GCACAGAAGA GTAGACTGTT CAGCGAGTAA ACCCCAAGAA
  CCTCCTGTTT CTGCCTCTCC ATCACTGAGA TTGTAAAAGT GTGTTCTACA CCCAACGTGT
  CATGTGCACT CTGGGGACTG AATCTTGGTC TCCAGCTTTG GCAAGAGCTT TATAACCTGA
  GTCATCCAAC CCCATTAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8694822	WI_WGS_15_31561631	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6288937					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31470010 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	Intron
Tssr133930	transcription start site region 133930	1943 bp upstream
Tssr133931	transcription start site region 133931	1912 bp upstream
Tssr133932	transcription start site region 133932	1884 bp upstream