rs6289138 SNP Detail

Summary

• ID
  rs6289138
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100127106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGTCCCT TTCCGACTGG
  CTCTCACGCC CCGCGGTCGC GCGGCGCGGG CCTTTAAAGA GGACCGGAAG TGGCGTGCGC
  AAGAGGGGCG CGCGGGTACC ATCGAGAACA AGGAGCGCTG GTTCGAGGGC GCGGCTAGAG
  AGGCCTCCCC CGCCCCCGTC CCTTGGCCCC GCCCTTCCGC GGATTCCTGG AGTCACCGGC
  S
  GCTCCTCGGC TTTGGTTGGC AGGCGCGGCC GACCTGGAGG GGTGTGGTTC GTCCATCCCC
  AGCGGAGACT TCGTGGAGGC TGCCCTCAGG GAGCCACGGC TGTGGGCCCC GGGACCTGCG
  TGGGGCAGCG GGCCGCGCCT GTGCAGTGCT CCGCCGTCCC TGCGCCGGGT GACATTGAGG
  CTCCGCCGCG GCGCTGTCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8695024	WI_WGS_5_97518318	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6289138					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100127106 () rs orientation: forward

Symbol	Name	Function Class
4930524J08Rik	RIKEN cDNA 4930524J08 gene	within coordinates
Cpgi16102	CpG island 16102	within coordinates
Gm17092	predicted gene 17092	within coordinates
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	309 bp upstream
Rr378342	regulatory region 378342	within coordinates
Rr615369	regulatory region 615369	1551 bp distal
Rr615370	regulatory region 615370	within coordinates
Tssr47472	transcription start site region 47472	677 bp downstream
Tssr47473	transcription start site region 47473	614 bp downstream
Tssr47474	transcription start site region 47474	563 bp downstream
Tssr52064	transcription start site region 52064	388 bp upstream
Tssr52065	transcription start site region 52065	334 bp upstream
Tssr52066	transcription start site region 52066	281 bp upstream