rs6289644 SNP Detail

Summary

• ID
  rs6289644
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:61803598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGCAAT CCTCCAGTCT
  CTACCATCTA CCCAGTTATG GGGTTAAAAG CAGCCATGAC CAGCTTTTTA ATGTGAGCTC
  TGAGCTGGAC TTGAGCTTAC ACTGAGCTTC TGAATGGTCT TAGATCTGTG ACAACACCTC
  CTGAACGTTG CGATTATGGG TTGTAGCACC TCATCCTGCT ATGGGTTATT GCTTTTCTAG
  W
  AATAATCTAG AAGTTGCTTC TATAGCAGAA AGCAACAATG AGTTCCTTCC ACTCCCGACT
  TCAGCTCAGG CACCTTCCCT TTCACTAAGC GTGGTAACAC TCCTTAGCAT GTGTAGACTG
  TTCATATGAC TGAAAACTTG AAGCAGTCAA GAAATGACTA GACAAAGTAT GTGGGTAAGG
  GGTTTAAGGA CTTTACGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8695530	WI_WGS_4_59206962	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6289644					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:61803598 () rs orientation: forward

Symbol	Name	Function Class
Rr376581	regulatory region 376581	1516 bp upstream