rs6289648 SNP Detail

Summary

• ID
  rs6289648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:61803602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAATCCTC CAGTCTCTAC
  CATCTACCCA GTTATGGGGT TAAAAGCAGC CATGACCAGC TTTTTAATGT GAGCTCTGAG
  CTGGACTTGA GCTTACACTG AGCTTCTGAA TGGTCTTAGA TCTGTGACAA CACCTCCTGA
  ACGTTGCGAT TATGGGTTGT AGCACCTCAT CCTGCTATGG GTTATTGCTT TTCTAGAAAT
  R
  ATCTAGAAGT TGCTTCTATA GCAGAAAGCA ACAATGAGTT CCTTCCACTC CCGACTTCAG
  CTCAGGCACC TTCCCTTTCA CTAAGCGTGG TAACACTCCT TAGCATGTGT AGACTGTTCA
  TATGACTGAA AACTTGAAGC AGTCAAGAAA TGACTAGACA AAGTATGTGG GTAAGGGGTT
  TAAGGACTTT ACGTGTAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8695534	WI_WGS_4_59206966	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6289648					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:61803602 () rs orientation: forward

Symbol	Name	Function Class
Rr376581	regulatory region 376581	1512 bp upstream