rs6289705 SNP Detail

Summary

• ID
  rs6289705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3310205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTCAGC ATGCTCACAT
  TGAAAATAGA AGTGATTTTT TTAATGCCTT AAAAAAAAAA AAAACCAAAA CCCTAAGTTG
  TAACTAATGC ATTAAGTGCT CTGCTCAAAA CCGTCTTCGC ATGAGGCGGG TATCTTTGCA
  GGCTGCAAGG CGCTGCTCTA GGTCTCGGAT AGTGTTCTGC AGACTTGCAA TTTCTTTGCT
  Y
  TTTTCTTCCT GAAGATGCTG AAGCTTCTAA ATGAAGCAGA AATAAGTCTG TCACAGCAAC
  TTAGAGGTAA GGTTAGGTAT AGTGAACCAC AAAACAACAA TCACAACACT TGTATTTTAA
  CAGACTAGCT TACTCTGAAA GGCCTGCCCT CTCATTTTTG TGTGATTTAT GGAGAAAAAC
  TATTTTAAGG CTACAAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8695591	WI_WGS_15_3106351	WI	MOUSE	f	SNP						C		T
ss62609605	NES17307822	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C		C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6289705					SNP	C	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609605	NES17307822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3310205 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	within coordinates
Rr498566	regulatory region 498566	576 bp proximal
Selenop	selenoprotein P	213 bp downstream
Tssr4538	transcription start site region 4538	1463 bp downstream
Tssr130397	transcription start site region 130397	1593 bp downstream
Tssr130398	transcription start site region 130398	1540 bp downstream
Tssr130399	transcription start site region 130399	1451 bp downstream
Tssr130400	transcription start site region 130400	1427 bp downstream
Tssr130401	transcription start site region 130401	1419 bp downstream
Tssr130402	transcription start site region 130402	1355 bp downstream
Tssr130403	transcription start site region 130403	1308 bp downstream
Tssr130404	transcription start site region 130404	1266 bp downstream
Tssr130405	transcription start site region 130405	1248 bp downstream
Tssr130406	transcription start site region 130406	1222 bp downstream
Tssr130407	transcription start site region 130407	1186 bp downstream
Tssr130408	transcription start site region 130408	1156 bp downstream
Tssr130409	transcription start site region 130409	1139 bp downstream
Tssr130410	transcription start site region 130410	1113 bp downstream
Tssr130411	transcription start site region 130411	1065 bp downstream
Tssr130412	transcription start site region 130412	984 bp downstream
Tssr130413	transcription start site region 130413	746 bp downstream
Tssr130414	transcription start site region 130414	692 bp downstream
Tssr130415	transcription start site region 130415	615 bp downstream
Tssr130416	transcription start site region 130416	325 bp downstream
Tssr133563	transcription start site region 133563	1486 bp upstream
Tssr133564	transcription start site region 133564	1455 bp upstream
Tssr133565	transcription start site region 133565	1411 bp upstream
Tssr133566	transcription start site region 133566	1399 bp upstream
Tssr133567	transcription start site region 133567	1148 bp upstream
Tssr133568	transcription start site region 133568	1021 bp upstream