rs6289942 SNP Detail

Summary

• ID
  rs6289942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105051622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTAAAG GGTAAACTAC
  CCTTTTCCAT TTCCGTTTGC TTCTCTCCCC CCCCCCCCCC CCCAACAATC AAGCGTTCAG
  ACAAGCAAAA ACAAAACCCA AACAGCTCCC AGATAGGGAC ATTTTATGAG CTCCCTTTCT
  GTCATTATTC TCTCTTGGCT GAGCAATCTG TTTTTGACAA CGCAGTATTT ATCTTCCTTG
  Y
  GATGCCTGGA TTCATGGTCT TCTGCCATCC ACTCTAGTAA TAATTTTGTT GGATAAAAGG
  TATAAAGAGA GTCTATTTTG AAAGTCAATT TGTAATTTTT GCATTTTTAG CTTTTTTCCC
  TTATCCCCCT AAAAATCCAT CTCAGATGGA TTAAAAGATT GATTGATAAA ATATCAGAGC
  TTAAAAATCA GAGTAAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8695829	WI_WGS_13_102329922	WI	MOUSE	f	SNP							C		T
ss52689535	NES15529105	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6289942					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52689535	NES15529105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105051622 () rs orientation: forward

Symbol	Name	Function Class
Gm41048	predicted gene, 41048	within coordinates
Gm60378	predicted gene, 60378	within coordinates
Rr389011	regulatory region 389011	850 bp upstream