rs6289999 SNP Detail

Summary

• ID
  rs6289999
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156312592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC TCACACTGTG GCACACACAA
  S
  CACACAGGGA GAAGCACAAA GCTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8695888	WI_WGS_4_151703034	WI	MOUSE	f	SNP							G		C
ss46789971	NES10982291	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C		G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6289999					SNP	G	G	G	G	G	G	G	C	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789971	NES10982291	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156312592 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	1200 bp downstream
Mir7658	microRNA 7658	1924 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	within coordinates
Rr606703	regulatory region 606703	382 bp proximal
Rr606704	regulatory region 606704	417 bp proximal
Tssr45022	transcription start site region 45022	369 bp downstream
Tssr45023	transcription start site region 45023	405 bp downstream
Tssr45024	transcription start site region 45024	660 bp downstream