rs6290054 SNP Detail

Summary

• ID
  rs6290054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156312624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGTCTT GGTTTCACTC
  TCAGCCTAGA CTCTTGAGCG AGCTCCCAGG GAGGAGCCAA CTTCCTCATC TTGCTTTGGA
  TTTGAATCCC TCCAAGCAGA CCAGGGATCA CCCCAAGCTG CTGGAAGCTG TGATGCCCCC
  ATGATCACTC ACACTGTGGC ACACACAAGC ACACAGGGAG AAGCACAAAG CTGTACTCAG
  R
  CTCCAGGCCC CGAGCCAACC ACTCCAGCCG GACACGCCCC TCCGCTCACC GTCCCAGGGA
  TGTAGTGGAA GATCCTGTTA GCCGCGGTGT CCCCATCAGG CCTAGCCTCG GTGCCAAACA
  AGCCAGCCAG CTTCCTGGCG CTGTCTTCTC TGGGAACAAG GGAAACCGAA GGCTCAAGGC
  CTGGTCCAGG CAGCAGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8695943	WI_WGS_4_151703066	WI	MOUSE	f	SNP							A		G
ss46789974	NES10982293	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6290054					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789974	NES10982293	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156312624 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	1168 bp downstream
Mir7658	microRNA 7658	1892 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	within coordinates
Rr606703	regulatory region 606703	350 bp proximal
Rr606704	regulatory region 606704	385 bp proximal
Tssr45022	transcription start site region 45022	337 bp downstream
Tssr45023	transcription start site region 45023	373 bp downstream
Tssr45024	transcription start site region 45024	628 bp downstream