rs6290422 SNP Detail

Summary

• ID
  rs6290422
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:52124719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA AGTAATATTT CAAATTAATT
  W
  TTTGAAAATG AAAGTGTATG TGTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8696313	WI_WGS_2_52757923	WI	MOUSE	f	SNP			A	T
ss146587483	ENSMUSSNP4619280	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T
ss320303092	CHEV_2_52090227	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6290422					SNP	T	T	A	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52124719 () rs orientation: forward

Symbol	Name	Function Class
Neb	nebulin	Intron
Rr556918	regulatory region 556918	1936 bp proximal
Tssr24046	transcription start site region 24046	1712 bp upstream
Tssr24047	transcription start site region 24047	885 bp downstream