rs6290822 SNP Detail

Summary

• ID
  rs6290822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61417276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTCGAG GGACAATCTC
  AATGTCCTCC ACATTCCGGT GCCTCTTGGG CGTCCCTCCT GGCCACTGCC GGATGCCATC
  GAAGGAAACT GCGCATCCCA CAATTCACCG AGGTTTGTTT TCCCCTCCAA CTCCAGATGG
  CCTATCTGGG GACAGCAGAG GCCCCTAGGT GCGGGCCGTT GCAGTTTTTT GATGAGCTGC
  R
  CACATATGGA TACCCGAACA TCTGGAGCGG CCATGTGCTG CTTGGGGCAG GCCAGCCCTG
  GTGAGCCAAT CCAGGGGCCC CGGGGTGCCG GGAGGCAGCA GGGCCCAGCC AGTGAGCGCG
  GATAAATTAT TCATGAACGA GTTATTTGTG GTGCAAGGGG TTCATCAGCT ACTTTGATTA
  AAAGTCCAAC GAGTAATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8696714	WI_WGS_9_62070797	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6290822					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61417276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21882	CpG island 21882	79 bp distal
Rr680558	regulatory region 680558	261 bp distal
Rr680559	regulatory region 680559	within coordinates
Tssr85515	transcription start site region 85515	261 bp downstream