rs6290967 SNP Detail

Summary

• ID
  rs6290967
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:5346351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTTTTA CTTCTGCTTA
  TTTGTATAAT TATAGATTGT TACAGTTCAA CATCAGGACT TTAAACACTG TCTTCAAAGC
  CTTGGAAGGC TATTTTAATA TGAGATTTGT ACTTACTGGA ATATTCAAGT TTGTGATTTA
  TAATACTAGG GCTCCTTTGA ATAATTTTTC TCTCCAAAGA CTAAACACAT CACAGGATGA
  R
  AGTCTATCTT CCGGAAATTC ACTGTGGGGA TGGTGAGGGG CTCACCCTGG GAAAATGTGG
  AATATCCACT GCTCTCTCTT TCAGTGATTT ACCTTAGCAG GACAATAATC ATCATTAGCA
  TTGTCCAAAA CAGATGAACT TATCTTAGTA GGAACTGAAT GGGTTTTCTA CAAGAAAGTT
  TAAGGGAAAA AAGAATAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8696859	WI_WGS_18_5208253	WI	MOUSE	f	SNP							A	G
ss48388915	NES12273729	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A			A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6290967					SNP	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48388915	NES12273729	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:5346351 () rs orientation: forward

Symbol	Name	Function Class
Gm50064	predicted gene, 50064	1907 bp downstream
Gm58537	predicted gene, 58537	within coordinates
Rr370337	regulatory region 370337	791 bp upstream