rs6290968 SNP Detail

Summary

• ID
  rs6290968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96092141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG GCCTTTGAAG GGATGTCGTT
  Y
  GGGTCAAAAA TGACAAAGAA AATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss8696860	WI_WGS_11_96954475	WI	MOUSE	f	SNP						C		T
ss37295511	NES08568893	PERLEGEN	MM_PANEL2	f	SNP			T	T	C		C			C	T	C	T
ss45217859	mCV27576754	ABI	CRAMUS_MOUSE	f	SNP	C	C	T			C			C
ss132675270	ENSMUSSNP1118919	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs6290968					SNP	C	C	T	T	C	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37295511	NES08568893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96092141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	1943 bp proximal
Gm30134	predicted gene, 30134	within coordinates
Gm56412	predicted gene, 56412	1485 bp upstream
Gm56413	predicted gene, 56413	1004 bp upstream
Rr386513	regulatory region 386513	557 bp downstream
Rr455321	regulatory region 455321	within coordinates
Rr455322	regulatory region 455322	331 bp proximal
Rr455323	regulatory region 455323	1058 bp proximal
Rr455324	regulatory region 455324	1537 bp proximal