rs6291362 SNP Detail

Summary

• ID
  rs6291362
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60702146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT ACAGCGGCCC AATCAGTGGG
  M
  GCATCCAGGT AGAGCCCGCC CCCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8697254	WI_WGS_11_61242405	WI	MOUSE	f	SNP							A		C
ss37191844	NES08422384	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	C		C		A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6291362					SNP	A	C	A	A	A	C	A	C	C	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37191844	NES08422384	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60702146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	within coordinates
Gm74448	predicted gene, 74448	within coordinates
Rr402613	regulatory region 402613	within coordinates
Rr448486	regulatory region 448486	117 bp distal
Rr448487	regulatory region 448487	within coordinates
Shmt1	serine hydroxymethyltransferase 1 (soluble)	84 bp upstream
Tssr108309	transcription start site region 108309	293 bp upstream
Tssr108310	transcription start site region 108310	110 bp upstream
Tssr108311	transcription start site region 108311	79 bp upstream
Tssr108312	transcription start site region 108312	50 bp upstream