rs6291391 SNP Detail

Summary

• ID
  rs6291391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60702168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCCGCAG CGGGCTGTCC
  TAACAGCCCA GCACGTGCTC CGGGAACCAG CCTCCCCACC ACGTGACACA CCACGTCCGG
  GGGAAACCCA AACTTGGCGC GCAGAGGCCG GAGCTCCACT AAACTCTCCC CAGCGCAGCC
  TGGTCCCGCC CCGCCCCTAC AGCGGCCCAA TCAGTGGGAG CATCCAGGTA GAGCCCGCCC
  Y
  CAGCTGCCCA CGCGCGATTC GCCCGCGCTC AGAGCAGGGC AAAGCCTGAC GGAAAAAAAA
  AAAAAAAAAA AGAGCTCTGA ACTGGAGGGG GTGGGAAGGA GGAGGGGACT GGGCGGTTCC
  TTACCTTGGG ACCTGGGACT TTTGGGCAGT ATTGCTGATT GTAGGAGTGT TTTGTGATCC
  AGAAGACCTG GATAGGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8697283	WI_WGS_11_61242427	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6291391					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60702168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	within coordinates
Gm74448	predicted gene, 74448	within coordinates
Rr402613	regulatory region 402613	within coordinates
Rr448486	regulatory region 448486	139 bp distal
Rr448487	regulatory region 448487	within coordinates
Shmt1	serine hydroxymethyltransferase 1 (soluble)	106 bp upstream
Tssr108309	transcription start site region 108309	315 bp upstream
Tssr108310	transcription start site region 108310	132 bp upstream
Tssr108311	transcription start site region 108311	101 bp upstream
Tssr108312	transcription start site region 108312	72 bp upstream