rs6291864 SNP Detail

Summary

• ID
  rs6291864
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100127619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CCTCCGTTAT
  TACAAGAGCC TAACGCCGGC CACGATTCTT TGAAGTCACT ATGGATTGGG AAGTGTATGT
  ATTAAGGTCG ACTCCAGGGC TCCTTTTTTT TTACGAGTTA CAGTCCTTGT ATTAAACAGG
  ATATATAAAT GTCATGAATC ATCTTTACGA GGTTTCTGGG TTTGTGGTGT TGAGGTGGCG
  ATTTTATAAA AAGAAAAAAA TGAAACGCCG TTAGGCGTGT GATTCACGAT TTTAAAATTA
  W
  TCNCTAAGAA ACCTATTGGA ATTCCTACTC AGGAGTTAGA CTTTGAAGCT TCCTGCAAGA
  CTTAGAAGAA AATGGAATTT Ctggtttggt ttggtttggt ttggtttggt ttTTTTTGTC
  GTCAACCACT CGACTGCTTA GTAAGTATCC AGTTTCCAAA CAGGGTTTGG AGAAGTTTAC
  AAAAGACAGC ATACAGGGAC AGGACTTCAG CCCAGCTAAT TAGGTACACG CTGTAATCCC
  AGAACTGTGA                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8697758	WI_WGS_5_97518831	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6291864					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100127619 () rs orientation: forward

Symbol	Name	Function Class
4930524J08Rik	RIKEN cDNA 4930524J08 gene	94 bp downstream
Cpgi16102	CpG island 16102	201 bp distal
Gm17092	predicted gene 17092	within coordinates
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	822 bp upstream
Rr378342	regulatory region 378342	within coordinates
Tssr47472	transcription start site region 47472	1190 bp downstream
Tssr47473	transcription start site region 47473	1127 bp downstream
Tssr47474	transcription start site region 47474	1076 bp downstream
Tssr52064	transcription start site region 52064	901 bp upstream
Tssr52065	transcription start site region 52065	847 bp upstream
Tssr52066	transcription start site region 52066	794 bp upstream