rs6291867 SNP Detail

Summary

• ID
  rs6291867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100127622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CCGTTATTAC
  AAGAGCCTAA CGCCGGCCAC GATTCTTTGA AGTCACTATG GATTGGGAAG TGTATGTATT
  AAGGTCGACT CCAGGGCTCC TTTTTTTTTA CGAGTTACAG TCCTTGTATT AAACAGGATA
  TATAAATGTC ATGAATCATC TTTACGAGGT TTCTGGGTTT GTGGTGTTGA GGTGGCGATT
  TTATAAAAAG AAAAAAATGA AACGCCGTTA GGCGTGTGAT TCACGATTTT AAAATTANTC
  R
  CTAAGAAACC TATTGGAATT CCTACTCAGG AGTTAGACTT TGAAGCTTCC TGCAAGACTT
  AGAAGAAAAT GGAATTTCtg gtttggtttg gtttggtttg gtttggtttT TTTTGTCGTC
  AACCACTCGA CTGCTTAGTA AGTATCCAGT TTCCAAACAG GGTTTGGAGA AGTTTACAAA
  AGACAGCATA CAGGGACAGG ACTTCAGCCC AGCTAATTAG GTACACGCTG TAATCCCAGA
  ACTGTGATCC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8697761	WI_WGS_5_97518834	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6291867					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100127622 () rs orientation: forward

Symbol	Name	Function Class
4930524J08Rik	RIKEN cDNA 4930524J08 gene	97 bp downstream
Cpgi16102	CpG island 16102	204 bp distal
Gm17092	predicted gene 17092	within coordinates
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	825 bp upstream
Rr378342	regulatory region 378342	within coordinates
Tssr47472	transcription start site region 47472	1193 bp downstream
Tssr47473	transcription start site region 47473	1130 bp downstream
Tssr47474	transcription start site region 47474	1079 bp downstream
Tssr52064	transcription start site region 52064	904 bp upstream
Tssr52065	transcription start site region 52065	850 bp upstream
Tssr52066	transcription start site region 52066	797 bp upstream