rs6291948 SNP Detail

Summary

• ID
  rs6291948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96092310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA ATAAATATTG TTAATGTTCT
  Y
  ATTTTTATTT AAAACGTTTT GTACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8697842	WI_WGS_11_96954644	WI	MOUSE	f	SNP				C	T
ss38774055	mCV27576762	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C		C
ss132675278	ENSMUSSNP4736247	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6291948					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96092310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	1774 bp proximal
Gm11538	predicted gene 11538	1970 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Gm56412	predicted gene, 56412	1654 bp upstream
Gm56413	predicted gene, 56413	1173 bp upstream
Rr386513	regulatory region 386513	726 bp downstream
Rr455321	regulatory region 455321	5 bp distal
Rr455322	regulatory region 455322	162 bp proximal
Rr455323	regulatory region 455323	889 bp proximal
Rr455324	regulatory region 455324	1368 bp proximal
Rr455325	regulatory region 455325	1973 bp proximal
Tssr104437	transcription start site region 104437	1957 bp upstream