rs6292407 SNP Detail

Summary

• ID
  rs6292407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3310704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCTGTA GATACTCTGC
  AGCAAAATAG TCGTGTCCGG ATATGATTTT GATTTAGTCT GAGCTCTTGC TAGTTTAGTG
  TCAAACTGAA CCAAATTAAA AAAGAGAATG TTATTAAGGG TGTTATAGTT TAAATACTTA
  CAAACAATGT TTCTGGAGGA AAAGTATACC TTTGCTATGT ATTTTGTAAT TGAACACATT
  Y
  CATTTAACAG ACAGAAAAAC CTTTATGAAA TAATCCAGAA AAAAGAACAA GGAACATGCA
  AACAAGAGTC AGCTAGGTGT GGGGTTAAAA CTGCAGTGGT GGCTTTACAA AGAGCCAGAC
  ACCACTGGGC ACAACCTCCA TATGTGGCAC AGGGCTTTTT CTCAAACCCC ACTGCTCCTC
  CCACTCCTCC ACATGAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8698302	WI_WGS_15_3106850	WI	MOUSE	f	SNP						C		T
ss62609599	NES17307824	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C		C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6292407					SNP	C	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609599	NES17307824	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3310704 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	within coordinates
Rr498566	regulatory region 498566	77 bp proximal
Selenop	selenoprotein P	712 bp downstream
Tssr4538	transcription start site region 4538	1962 bp downstream
Tssr130399	transcription start site region 130399	1950 bp downstream
Tssr130400	transcription start site region 130400	1926 bp downstream
Tssr130401	transcription start site region 130401	1918 bp downstream
Tssr130402	transcription start site region 130402	1854 bp downstream
Tssr130403	transcription start site region 130403	1807 bp downstream
Tssr130404	transcription start site region 130404	1765 bp downstream
Tssr130405	transcription start site region 130405	1747 bp downstream
Tssr130406	transcription start site region 130406	1721 bp downstream
Tssr130407	transcription start site region 130407	1685 bp downstream
Tssr130408	transcription start site region 130408	1655 bp downstream
Tssr130409	transcription start site region 130409	1638 bp downstream
Tssr130410	transcription start site region 130410	1612 bp downstream
Tssr130411	transcription start site region 130411	1564 bp downstream
Tssr130412	transcription start site region 130412	1483 bp downstream
Tssr130413	transcription start site region 130413	1245 bp downstream
Tssr130414	transcription start site region 130414	1191 bp downstream
Tssr130415	transcription start site region 130415	1114 bp downstream
Tssr130416	transcription start site region 130416	824 bp downstream
Tssr133563	transcription start site region 133563	1985 bp upstream
Tssr133564	transcription start site region 133564	1954 bp upstream
Tssr133565	transcription start site region 133565	1910 bp upstream
Tssr133566	transcription start site region 133566	1898 bp upstream
Tssr133567	transcription start site region 133567	1647 bp upstream
Tssr133568	transcription start site region 133568	1520 bp upstream