rs6293183 SNP Detail

Summary

• ID
  rs6293183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80969305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TCTCCTTACA
  TAGTTTTGTT TGGTTTAAtt tttgagttag agactcgtgt agcccacagg ggatcaaatt
  tgctaagtag cagaggatga tcttggacta attcctggag aaccagggat tctccatgcc
  tccagctcct gggatcatag gtgtgtggtg cctcacccag attGTTTAAA TTAGATTAGA
  TTTAGATTAG ACttttttat taaaaaaaaa aaaCTTTGTG TCTTtttttt ttttttaatt
  Y
  gagacaggat ttcctgtgtg aaactgtcct ggctgccagg attaaactta gaaggggctg
  acctcaaaca gacagagatc ccagggcctc tgcACTACCA TACCCAGAGa tttaaaaaaa
  taatatattt atttttattt ttCGAACATG GTGCTTTGCC TGCATCTTTG AGTgagggca
  ccagatccca gggagctgaa gaagttacag atagttgtga gctgcaatgt gtgtactggg
  aaatgaaccc                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8699078	WI_WGS_10_81607207	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6293183					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80969305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1942	CpG island 1942	742 bp proximal
Cpgi1943	CpG island 1943	1680 bp proximal
Rr435527	regulatory region 435527	399 bp proximal
Tssr94677	transcription start site region 94677	993 bp upstream
Tssr94678	transcription start site region 94678	1802 bp upstream
Tssr94679	transcription start site region 94679	1993 bp upstream
Tssr98562	transcription start site region 98562	906 bp downstream
Zbtb7a	zinc finger and BTB domain containing 7a	1808 bp upstream