rs6293213 SNP Detail

Summary

• ID
  rs6293213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12772516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTGTGGA GGTGACTATT
  CGGCGGTCTA GCGGGTACTT CCTGGGACGC GCACCCAGTA GAGTAGGAAG CAGTGCTTGC
  GACCATTTTT GAGCGAGGCG GGTAGTGAGT GGCCGTTTGG CTCTCGGTGG TTCCATTCAA
  TCTTACACTT ACGCGGAGCG CAGCGGAACC GGGCTAGACT GGATCTTTGC TCTCTGAGGA
  Y
  TCAGCAAACG CAGGGCCTGG ACGTTTTAAG GGACGTTGTC GAAGGGTGCA GAAGCAGGCT
  CCCCTAATCC CACCGCAATC CCAGATTCGG ATTGATGTAA ACTAGTTTAA ATTTCGAATT
  GCTCTGGAGG CTTGAGGCAT CAAGTTGGCT TGAGCCCAGG CGCTCAGGGA TACCCTAGGC
  AACACATCGA GACTCTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8699108	WI_WGS_7_9154296	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6293213					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12772516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	within coordinates
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	75 bp downstream
Rr642445	regulatory region 642445	601 bp distal
Rr642446	regulatory region 642446	923 bp distal
Rr642447	regulatory region 642447	327 bp distal
Rr642448	regulatory region 642448	within coordinates
Rr642449	regulatory region 642449	1177 bp proximal
Tssr64535	transcription start site region 64535	889 bp downstream
Tssr64536	transcription start site region 64536	542 bp downstream
Tssr70651	transcription start site region 70651	1927 bp upstream
Tssr70652	transcription start site region 70652	922 bp upstream
Tssr70653	transcription start site region 70653	897 bp upstream
Tssr70654	transcription start site region 70654	757 bp upstream
Tssr70655	transcription start site region 70655	638 bp upstream
Tssr70656	transcription start site region 70656	620 bp upstream
Tssr70657	transcription start site region 70657	282 bp upstream
Tssr70658	transcription start site region 70658	267 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	314 bp upstream