rs6293483 SNP Detail

Summary

• ID
  rs6293483
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51182579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGTAGAA AATGAACCTT
  GCTTGTGGGA GAGGAAGCAG GGGGCAGGTG TACTATCTAC CACCTGTTCC CTAAGCTGTG
  CCCTGCTATG GTCTTTGCTA CTTTACTGAG CTGTGCAATG CTAGGGGCAC AGCTCAGGGA
  GAAGGCTGAC TTAGATTATG CAAGTCCTTG GGTTAGACTC CTGACATCAG ATATTGAGCT
  R
  TGTACCCAAG GTGGAGTGGA TTTGGGATTT CAAAGGGAAT GGAAGAAGTC TAGACCTAAC
  TTTCCTGTTT CCCACAGCTC CTAAGTCACT TTAAGATAAA GCCAACATTA CCTCTCCTCC
  TTGGTTCCGG GCAAAATCGC TGCTTTCTGA ATGATTTCCT CTCCCTTCTT TAAAGTGCCC
  GCAGAAGGGA GAACTCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8699378	WI_WGS_11_51703093	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6293483					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51182579 () rs orientation: forward

Symbol	Name	Function Class
Col23a1	collagen, type XXIII, alpha 1	within coordinates
Cpgi2834	CpG island 2834	822 bp distal
Rr446561	regulatory region 446561	1822 bp distal
Rr446562	regulatory region 446562	1309 bp distal
Tssr101277	transcription start site region 101277	1998 bp downstream
Tssr101278	transcription start site region 101278	1741 bp downstream