rs6293599 SNP Detail

Summary

• ID
  rs6293599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12772525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGACTAT TCGGCGGTCT
  AGCGGGTACT TCCTGGGACG CGCACCCAGT AGAGTAGGAA GCAGTGCTTG CGACCATTTT
  TGAGCGAGGC GGGTAGTGAG TGGCCGTTTG GCTCTCGGTG GTTCCATTCA ATCTTACACT
  TACGCGGAGC GCAGCGGAAC CGGGCTAGAC TGGATCTTTG CTCTCTGAGG ATTCAGCAAA
  Y
  GCAGGGCCTG GACGTTTTAA GGGACGTTGT CGAAGGGTGC AGAAGCAGGC TCCCCTAATC
  CCACCGCAAT CCCAGATTCG GATTGATGTA AACTAGTTTA AATTTCGAAT TGCTCTGGAG
  GCTTGAGGCA TCAAGTTGGC TTGAGCCCAG GCGCTCAGGG ATACCCTAGG CAACACATCG
  AGACTCTTGT TCCTTAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8699494	WI_WGS_7_9154305	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6293599					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12772525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	within coordinates
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	84 bp downstream
Rr642445	regulatory region 642445	610 bp distal
Rr642446	regulatory region 642446	932 bp distal
Rr642447	regulatory region 642447	336 bp distal
Rr642448	regulatory region 642448	within coordinates
Rr642449	regulatory region 642449	1168 bp proximal
Tssr64535	transcription start site region 64535	898 bp downstream
Tssr64536	transcription start site region 64536	551 bp downstream
Tssr70651	transcription start site region 70651	1936 bp upstream
Tssr70652	transcription start site region 70652	931 bp upstream
Tssr70653	transcription start site region 70653	906 bp upstream
Tssr70654	transcription start site region 70654	766 bp upstream
Tssr70655	transcription start site region 70655	647 bp upstream
Tssr70656	transcription start site region 70656	629 bp upstream
Tssr70657	transcription start site region 70657	291 bp upstream
Tssr70658	transcription start site region 70658	276 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	323 bp upstream