rs6293840 SNP Detail

Summary

• ID
  rs6293840
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131196861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGAAGGG TGCTTGTTCC
  CGGTTAGTGA GACTAATGAT GCTACCCACC TTGTCATTTG CTCCGTTAGG TGAATTGCGT
  CCTGGCAAGG ATGAGAAACC GGAACCAGAA TGACTCTGAA AGAGTGACTC TCCACTTAAA
  TGAACCTGTG CGTTTCTGTT GCCTTGGGGC ACAAGTGTCC ATATGTGTGT GTGCCCCCCA
  M
  CCCCCATCCC CGGCCCCGGC TGATCTTACC AATTAGGTTG CAGGAAGGGT TGCTTCTGTC
  TAAAAATGGC CAAGGATCAG CATTTCTTTG GAGTCGTTTC CACACCTTGT AGCAGTTTTC
  AGTCAACCAC GGTCGTTTTG GAGGGTGTCA CTAGGCATCC AGGCAGCTGG CTAAACCTCC
  AATGAGTTTA ATTGATAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8699735	WI_WGS_3_131972320	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6293840					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131196861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13839	CpG island 13839	162 bp distal
Gm36753	predicted gene, 36753	within coordinates
Rr585351	regulatory region 585351	696 bp distal
Rr585352	regulatory region 585352	within coordinates
Rr585353	regulatory region 585353	414 bp distal
Rr585354	regulatory region 585354	1449 bp proximal
Sgms2	sphingomyelin synthase 2	within coordinates
Tssr1055	transcription start site region 1055	1371 bp downstream
Tssr1056	transcription start site region 1056	1069 bp downstream
Tssr31735	transcription start site region 31735	1347 bp downstream
Tssr31736	transcription start site region 31736	695 bp downstream
Tssr31737	transcription start site region 31737	459 bp upstream
Tssr35709	transcription start site region 35709	1343 bp upstream
Tssr35710	transcription start site region 35710	1326 bp upstream
Tssr35711	transcription start site region 35711	1164 bp upstream
Tssr35712	transcription start site region 35712	1134 bp upstream
Tssr35713	transcription start site region 35713	865 bp upstream
Tssr35714	transcription start site region 35714	605 bp upstream
Tssr35715	transcription start site region 35715	569 bp upstream
Tssr35716	transcription start site region 35716	434 bp upstream
Tssr35717	transcription start site region 35717	358 bp upstream
Tssr35718	transcription start site region 35718	332 bp upstream
Tssr35719	transcription start site region 35719	89 bp upstream
Tssr35720	transcription start site region 35720	43 bp upstream
Tssr35721	transcription start site region 35721	175 bp downstream
Tssr35722	transcription start site region 35722	227 bp downstream
Tssr35723	transcription start site region 35723	286 bp downstream
Tssr35724	transcription start site region 35724	299 bp downstream
Tssr35725	transcription start site region 35725	337 bp downstream