rs6293847 SNP Detail

Summary

• ID
  rs6293847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131196868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATGACTCT GAAAGAGTGA CTCTCCACTT AAATGAACCT
  GTGCGTTTCT GTTGCCTTGG GGCACAAGTG TCCATATGTG TGTGTGCCCC CCAACCCCCA
  Y
  CCCCGGCCCC GGCTGATCTT ACCAATTAGG TTGCAGGAAG GGTTGCTTCT GTCTAAAAAT
  GGCCAAGGAT CAGCATTTCT TTGGAGTCGT TTCCACACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8699742	WI_WGS_3_131972327	WI	MOUSE	f	SNP	T	C
ss135904599	ENSMUSSNP1479075	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6293847					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131196868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13839	CpG island 13839	169 bp distal
Gm36753	predicted gene, 36753	within coordinates
Rr585351	regulatory region 585351	703 bp distal
Rr585352	regulatory region 585352	within coordinates
Rr585353	regulatory region 585353	421 bp distal
Rr585354	regulatory region 585354	1442 bp proximal
Sgms2	sphingomyelin synthase 2	within coordinates
Tssr1055	transcription start site region 1055	1378 bp downstream
Tssr1056	transcription start site region 1056	1076 bp downstream
Tssr31735	transcription start site region 31735	1354 bp downstream
Tssr31736	transcription start site region 31736	702 bp downstream
Tssr31737	transcription start site region 31737	452 bp upstream
Tssr35709	transcription start site region 35709	1350 bp upstream
Tssr35710	transcription start site region 35710	1333 bp upstream
Tssr35711	transcription start site region 35711	1171 bp upstream
Tssr35712	transcription start site region 35712	1141 bp upstream
Tssr35713	transcription start site region 35713	872 bp upstream
Tssr35714	transcription start site region 35714	612 bp upstream
Tssr35715	transcription start site region 35715	576 bp upstream
Tssr35716	transcription start site region 35716	441 bp upstream
Tssr35717	transcription start site region 35717	365 bp upstream
Tssr35718	transcription start site region 35718	339 bp upstream
Tssr35719	transcription start site region 35719	96 bp upstream
Tssr35720	transcription start site region 35720	50 bp upstream
Tssr35721	transcription start site region 35721	168 bp downstream
Tssr35722	transcription start site region 35722	220 bp downstream
Tssr35723	transcription start site region 35723	279 bp downstream
Tssr35724	transcription start site region 35724	292 bp downstream
Tssr35725	transcription start site region 35725	330 bp downstream