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rs6293921 SNP Detail
Summary
  • ID
    rs6293921
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:131196904 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                           TAGGTGAGCT
    GGAAGGGTGC TTGTTCCCGG TTAGTGAGAC TAATGATGCT ACCCACCTTG TCATTTGCTC
    CGTTAGGTGA ATTGCGTCCT GGCAAGGATG AGAAACCGGA ACCAGAATGA CTCTGAAAGA
    GTGACTCTCC ACTTAAATGA ACCTGTGCGT TTCTGTTGCC TTGGGGCACA AGTGTCCATA
    TGTGTGTGTG CCCCCNANCC CCCANCCCCG GCCCCGGCTG ATCTTACCAA TTAGGTTGCA
    R
    GAANGGTTGC TTCTGTCTAA AAATGGCCAA GGNTCAGCAT TTCTTTGGAG TCGTTTCCAC
    ACCTTGTAGC AGTTTTCAGT CAACCACGGT CGTTTTGGAG GGTGTCACTA GGCATCCAGG
    CAGCTGGCTA AACCTCCAAT GAGTTTAATT GATAGAAATG CTTTTTATTG CATTGCCTAC
    TTCCCTTCTG GTTTTAAGTT TGAACGTGTA GGATTGTACA GACTGTCCTA TGGGAGTTAA
    CATAATCCAC                                                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
C57BL/6J
CZECHII/EiJ
ss8699816 WI_WGS_3_131972363 WI MOUSE f SNP G A
SNP Consensus Information
SNP Consensus Type
C57BL/6J
CZECHII/EiJ
rs6293921 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:131196904 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13839 CpG island 13839 205 bp distal
Gm36753 predicted gene, 36753 within coordinates
Rr585351 regulatory region 585351 739 bp distal
Rr585352 regulatory region 585352 within coordinates
Rr585353 regulatory region 585353 457 bp distal
Rr585354 regulatory region 585354 1406 bp proximal
Sgms2 sphingomyelin synthase 2 within coordinates
Tssr1055 transcription start site region 1055 1414 bp downstream
Tssr1056 transcription start site region 1056 1112 bp downstream
Tssr31735 transcription start site region 31735 1390 bp downstream
Tssr31736 transcription start site region 31736 738 bp downstream
Tssr31737 transcription start site region 31737 416 bp upstream
Tssr35709 transcription start site region 35709 1386 bp upstream
Tssr35710 transcription start site region 35710 1369 bp upstream
Tssr35711 transcription start site region 35711 1207 bp upstream
Tssr35712 transcription start site region 35712 1177 bp upstream
Tssr35713 transcription start site region 35713 908 bp upstream
Tssr35714 transcription start site region 35714 648 bp upstream
Tssr35715 transcription start site region 35715 612 bp upstream
Tssr35716 transcription start site region 35716 477 bp upstream
Tssr35717 transcription start site region 35717 401 bp upstream
Tssr35718 transcription start site region 35718 375 bp upstream
Tssr35719 transcription start site region 35719 132 bp upstream
Tssr35720 transcription start site region 35720 86 bp upstream
Tssr35721 transcription start site region 35721 132 bp downstream
Tssr35722 transcription start site region 35722 184 bp downstream
Tssr35723 transcription start site region 35723 243 bp downstream
Tssr35724 transcription start site region 35724 256 bp downstream
Tssr35725 transcription start site region 35725 294 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory