TAGGTGAGCT GGAAGGGTGC TTGTTCCCGG TTAGTGAGAC TAATGATGCT ACCCACCTTG TCATTTGCTC CGTTAGGTGA ATTGCGTCCT GGCAAGGATG AGAAACCGGA ACCAGAATGA CTCTGAAAGA GTGACTCTCC ACTTAAATGA ACCTGTGCGT TTCTGTTGCC TTGGGGCACA AGTGTCCATA TGTGTGTGTG CCCCCNANCC CCCANCCCCG GCCCCGGCTG ATCTTACCAA TTAGGTTGCA R GAANGGTTGC TTCTGTCTAA AAATGGCCAA GGNTCAGCAT TTCTTTGGAG TCGTTTCCAC ACCTTGTAGC AGTTTTCAGT CAACCACGGT CGTTTTGGAG GGTGTCACTA GGCATCCAGG CAGCTGGCTA AACCTCCAAT GAGTTTAATT GATAGAAATG CTTTTTATTG CATTGCCTAC TTCCCTTCTG GTTTTAAGTT TGAACGTGTA GGATTGTACA GACTGTCCTA TGGGAGTTAA CATAATCCAC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | C57BL/6J |
CZECHII/EiJ |
---|---|---|---|---|---|---|---|
ss8699816 | WI_WGS_3_131972363 | WI | MOUSE | f | SNP | G | A |
SNP Consensus Information | |||||||
SNP | Consensus Type | C57BL/6J |
CZECHII/EiJ |
||||
rs6293921 | SNP | G | A |
Location: Chr3:131196904 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13839 | CpG island 13839 | 205 bp distal | ||||||
Gm36753 | predicted gene, 36753 | within coordinates | ||||||
Rr585351 | regulatory region 585351 | 739 bp distal | ||||||
Rr585352 | regulatory region 585352 | within coordinates | ||||||
Rr585353 | regulatory region 585353 | 457 bp distal | ||||||
Rr585354 | regulatory region 585354 | 1406 bp proximal | ||||||
Sgms2 | sphingomyelin synthase 2 | within coordinates | ||||||
Tssr1055 | transcription start site region 1055 | 1414 bp downstream | ||||||
Tssr1056 | transcription start site region 1056 | 1112 bp downstream | ||||||
Tssr31735 | transcription start site region 31735 | 1390 bp downstream | ||||||
Tssr31736 | transcription start site region 31736 | 738 bp downstream | ||||||
Tssr31737 | transcription start site region 31737 | 416 bp upstream | ||||||
Tssr35709 | transcription start site region 35709 | 1386 bp upstream | ||||||
Tssr35710 | transcription start site region 35710 | 1369 bp upstream | ||||||
Tssr35711 | transcription start site region 35711 | 1207 bp upstream | ||||||
Tssr35712 | transcription start site region 35712 | 1177 bp upstream | ||||||
Tssr35713 | transcription start site region 35713 | 908 bp upstream | ||||||
Tssr35714 | transcription start site region 35714 | 648 bp upstream | ||||||
Tssr35715 | transcription start site region 35715 | 612 bp upstream | ||||||
Tssr35716 | transcription start site region 35716 | 477 bp upstream | ||||||
Tssr35717 | transcription start site region 35717 | 401 bp upstream | ||||||
Tssr35718 | transcription start site region 35718 | 375 bp upstream | ||||||
Tssr35719 | transcription start site region 35719 | 132 bp upstream | ||||||
Tssr35720 | transcription start site region 35720 | 86 bp upstream | ||||||
Tssr35721 | transcription start site region 35721 | 132 bp downstream | ||||||
Tssr35722 | transcription start site region 35722 | 184 bp downstream | ||||||
Tssr35723 | transcription start site region 35723 | 243 bp downstream | ||||||
Tssr35724 | transcription start site region 35724 | 256 bp downstream | ||||||
Tssr35725 | transcription start site region 35725 | 294 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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