rs6293921 SNP Detail

Summary

• ID
  rs6293921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131196904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TAGGTGAGCT
  GGAAGGGTGC TTGTTCCCGG TTAGTGAGAC TAATGATGCT ACCCACCTTG TCATTTGCTC
  CGTTAGGTGA ATTGCGTCCT GGCAAGGATG AGAAACCGGA ACCAGAATGA CTCTGAAAGA
  GTGACTCTCC ACTTAAATGA ACCTGTGCGT TTCTGTTGCC TTGGGGCACA AGTGTCCATA
  TGTGTGTGTG CCCCCNANCC CCCANCCCCG GCCCCGGCTG ATCTTACCAA TTAGGTTGCA
  R
  GAANGGTTGC TTCTGTCTAA AAATGGCCAA GGNTCAGCAT TTCTTTGGAG TCGTTTCCAC
  ACCTTGTAGC AGTTTTCAGT CAACCACGGT CGTTTTGGAG GGTGTCACTA GGCATCCAGG
  CAGCTGGCTA AACCTCCAAT GAGTTTAATT GATAGAAATG CTTTTTATTG CATTGCCTAC
  TTCCCTTCTG GTTTTAAGTT TGAACGTGTA GGATTGTACA GACTGTCCTA TGGGAGTTAA
  CATAATCCAC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8699816	WI_WGS_3_131972363	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6293921					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131196904 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13839	CpG island 13839			205 bp distal
Gm36753	predicted gene, 36753			within coordinates
Rr585351	regulatory region 585351			739 bp distal
Rr585352	regulatory region 585352			within coordinates
Rr585353	regulatory region 585353			457 bp distal
Rr585354	regulatory region 585354			1406 bp proximal
Sgms2	sphingomyelin synthase 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr1055	transcription start site region 1055			1414 bp downstream
Tssr1056	transcription start site region 1056			1112 bp downstream
Tssr31735	transcription start site region 31735			1390 bp downstream
Tssr31736	transcription start site region 31736			738 bp downstream
Tssr31737	transcription start site region 31737			416 bp upstream
Tssr35709	transcription start site region 35709			1386 bp upstream
Tssr35710	transcription start site region 35710			1369 bp upstream
Tssr35711	transcription start site region 35711			1207 bp upstream
Tssr35712	transcription start site region 35712			1177 bp upstream
Tssr35713	transcription start site region 35713			908 bp upstream
Tssr35714	transcription start site region 35714			648 bp upstream
Tssr35715	transcription start site region 35715			612 bp upstream
Tssr35716	transcription start site region 35716			477 bp upstream
Tssr35717	transcription start site region 35717			401 bp upstream
Tssr35718	transcription start site region 35718			375 bp upstream
Tssr35719	transcription start site region 35719			132 bp upstream
Tssr35720	transcription start site region 35720			86 bp upstream
Tssr35721	transcription start site region 35721			132 bp downstream
Tssr35722	transcription start site region 35722			184 bp downstream
Tssr35723	transcription start site region 35723			243 bp downstream
Tssr35724	transcription start site region 35724			256 bp downstream
Tssr35725	transcription start site region 35725			294 bp downstream