rs6293923 SNP Detail

Summary

• ID
  rs6293923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131196908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGTCAT TTGCTCCGTT
  AGGTGAATTG CGTCCTGGCA AGGATGAGAA ACCGGAACCA GAATGACTCT GAAAGAGTGA
  CTCTCCACTT AAATGAACCT GTGCGTTTCT GTTGCCTTGG GGCACAAGTG TCCATATGTG
  TGTGTGCCCC CCAACCCCCA TCCCCGGCCC CGGCTGATCT TACCAATTAG GTTGCAGGAA
  R
  GGTTGCTTCT GTCTAAAAAT GGCCAAGGAT CAGCATTTCT TTGGAGTCGT TTCCACACCT
  TGTAGCAGTT TTCAGTCAAC CACGGTCGTT TTGGAGGGTG TCACTAGGCA TCCAGGCAGC
  TGGCTAAACC TCCAATGAGT TTAATTGATA GAAATGCTTT TTATTGCATT GCCTACTTCC
  CTTCTGGTTT TAAGTTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8699818	WI_WGS_3_131972367	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6293923					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131196908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13839	CpG island 13839	209 bp distal
Gm36753	predicted gene, 36753	within coordinates
Rr585351	regulatory region 585351	743 bp distal
Rr585352	regulatory region 585352	within coordinates
Rr585353	regulatory region 585353	461 bp distal
Rr585354	regulatory region 585354	1402 bp proximal
Sgms2	sphingomyelin synthase 2	within coordinates
Tssr1055	transcription start site region 1055	1418 bp downstream
Tssr1056	transcription start site region 1056	1116 bp downstream
Tssr31735	transcription start site region 31735	1394 bp downstream
Tssr31736	transcription start site region 31736	742 bp downstream
Tssr31737	transcription start site region 31737	412 bp upstream
Tssr35709	transcription start site region 35709	1390 bp upstream
Tssr35710	transcription start site region 35710	1373 bp upstream
Tssr35711	transcription start site region 35711	1211 bp upstream
Tssr35712	transcription start site region 35712	1181 bp upstream
Tssr35713	transcription start site region 35713	912 bp upstream
Tssr35714	transcription start site region 35714	652 bp upstream
Tssr35715	transcription start site region 35715	616 bp upstream
Tssr35716	transcription start site region 35716	481 bp upstream
Tssr35717	transcription start site region 35717	405 bp upstream
Tssr35718	transcription start site region 35718	379 bp upstream
Tssr35719	transcription start site region 35719	136 bp upstream
Tssr35720	transcription start site region 35720	90 bp upstream
Tssr35721	transcription start site region 35721	128 bp downstream
Tssr35722	transcription start site region 35722	180 bp downstream
Tssr35723	transcription start site region 35723	239 bp downstream
Tssr35724	transcription start site region 35724	252 bp downstream
Tssr35725	transcription start site region 35725	290 bp downstream