rs6293973 SNP Detail

Summary

• ID
  rs6293973
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131196937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCCTGGC AAGGATGAGA
  AACCGGAACC AGAATGACTC TGAAAGAGTG ACTCTCCACT TAAATGAACC TGTGCGTTTC
  TGTTGCCTTG GGGCACAAGT GTCCATATGT GTGTGTGCCC CCCAACCCCC ATCCCCGGCC
  CCGGCTGATC TTACCAATTA GGTTGCAGGA AGGGTTGCTT CTGTCTAAAA ATGGCCAAGG
  M
  TCAGCATTTC TTTGGAGTCG TTTCCACACC TTGTAGCAGT TTTCAGTCAA CCACGGTCGT
  TTTGGAGGGT GTCACTAGGC ATCCAGGCAG CTGGCTAAAC CTCCAATGAG TTTAATTGAT
  AGAAATGCTT TTTATTGCAT TGCCTACTTC CCTTCTGGTT TTAAGTTTGA ACGTGTAGGA
  TTGTACAGAC TGTCCTATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8699868	WI_WGS_3_131972396	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6293973					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131196937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13839	CpG island 13839	238 bp distal
Gm36753	predicted gene, 36753	within coordinates
Rr585351	regulatory region 585351	772 bp distal
Rr585352	regulatory region 585352	within coordinates
Rr585353	regulatory region 585353	490 bp distal
Rr585354	regulatory region 585354	1373 bp proximal
Sgms2	sphingomyelin synthase 2	within coordinates
Tssr1055	transcription start site region 1055	1447 bp downstream
Tssr1056	transcription start site region 1056	1145 bp downstream
Tssr31735	transcription start site region 31735	1423 bp downstream
Tssr31736	transcription start site region 31736	771 bp downstream
Tssr31737	transcription start site region 31737	383 bp upstream
Tssr35709	transcription start site region 35709	1419 bp upstream
Tssr35710	transcription start site region 35710	1402 bp upstream
Tssr35711	transcription start site region 35711	1240 bp upstream
Tssr35712	transcription start site region 35712	1210 bp upstream
Tssr35713	transcription start site region 35713	941 bp upstream
Tssr35714	transcription start site region 35714	681 bp upstream
Tssr35715	transcription start site region 35715	645 bp upstream
Tssr35716	transcription start site region 35716	510 bp upstream
Tssr35717	transcription start site region 35717	434 bp upstream
Tssr35718	transcription start site region 35718	408 bp upstream
Tssr35719	transcription start site region 35719	165 bp upstream
Tssr35720	transcription start site region 35720	119 bp upstream
Tssr35721	transcription start site region 35721	99 bp downstream
Tssr35722	transcription start site region 35722	151 bp downstream
Tssr35723	transcription start site region 35723	210 bp downstream
Tssr35724	transcription start site region 35724	223 bp downstream
Tssr35725	transcription start site region 35725	261 bp downstream