rs6294164 SNP Detail

Summary

• ID
  rs6294164
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12772628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTTTGGCT CTCGGTGGTT
  CCATTCAATC TTACACTTAC GCGGAGCGCA GCGGAACCGG GCTAGACTGG ATCTTTGCTC
  TCTGAGGATT CAGCAAACGC AGGGCCTGGA CGTTTTAAGG GACGTTGTCG AAGGGTGCAG
  AAGCAGGCTC CCCTAATCCC ACCGCAATCC CAGATTCGGA TTGATGTAAA CTAGTTTAAA
  W
  TTCGAATTGC TCTGGAGGCT TGAGGCATCA AGTTGGCTTG AGCCCAGGCG CTCAGGGATA
  CCCTAGGCAA CACATCGAGA CTCTTGTTCC TTAAAATAGA TTTCTATTGT GCAACAGGCT
  GTGAGCAACT GTGTAGTTCT AGGGTCCAAG GTGGACGTGG GTATAGGACT CATAACTGCG
  GCTTAGAGAA CAGCAGAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8700059	WI_WGS_7_9154408	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6294164					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12772628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	within coordinates
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	187 bp downstream
Rr642445	regulatory region 642445	713 bp distal
Rr642446	regulatory region 642446	1035 bp distal
Rr642447	regulatory region 642447	439 bp distal
Rr642448	regulatory region 642448	within coordinates
Rr642449	regulatory region 642449	1065 bp proximal
Tssr64535	transcription start site region 64535	1001 bp downstream
Tssr64536	transcription start site region 64536	654 bp downstream
Tssr70652	transcription start site region 70652	1034 bp upstream
Tssr70653	transcription start site region 70653	1009 bp upstream
Tssr70654	transcription start site region 70654	869 bp upstream
Tssr70655	transcription start site region 70655	750 bp upstream
Tssr70656	transcription start site region 70656	732 bp upstream
Tssr70657	transcription start site region 70657	394 bp upstream
Tssr70658	transcription start site region 70658	379 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	426 bp upstream