rs6294271 SNP Detail

Summary

• ID
  rs6294271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101942870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCCAGCCT GGGCTCTTTC
  CCCTTGTACC GCCGTACTCC CCAAGCCTCC CCATCTCTGC CTTTCCCATC TTGGGCTCAG
  AGAACACGAG GCCAGCAGGT GCCTTCGTAG CTCCTTAATT CCAAAGACCC TTGAGAGGCT
  CATGCCACGC CTTGATAGAA TTAACTTCTC TCGGCGCTAC CACAATCACC ACGTTTCCCA
  R
  GATCCCATTC CTAGTTTCCT TGCTTACGTA CTTTTCAGGA AACCAGAAGT CAGGCCATAT
  CCAGCCCCAG TACTCTGGCC CCTGTGACAA GGAGAACTTA AGCATCATCT ATGCCTACTT
  TTCTACCCTT TAATTTTACG ATTCCTTTGC CCCTTTCAAA GCCTTTCTTT ACCTGAACGA
  TTAAAGAGAG ACTTCTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8700166	WI_WGS_12_96191860	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6294271					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101942870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5001	CpG island 5001	88 bp distal
Cpsf2	cleavage and polyadenylation specific factor 2	within coordinates
Ndufb1	NADH:ubiquinone oxidoreductase subunit B1	873 bp upstream
Rr387709	regulatory region 387709	within coordinates
Tssr3923	transcription start site region 3923	725 bp upstream
Tssr114729	transcription start site region 114729	1240 bp downstream
Tssr114730	transcription start site region 114730	860 bp downstream
Tssr114731	transcription start site region 114731	607 bp downstream
Tssr114732	transcription start site region 114732	594 bp downstream
Tssr117383	transcription start site region 117383	865 bp upstream
Tssr117384	transcription start site region 117384	835 bp upstream
Tssr117385	transcription start site region 117385	687 bp upstream
Tssr117386	transcription start site region 117386	665 bp upstream
Tssr117387	transcription start site region 117387	627 bp upstream
Tssr117388	transcription start site region 117388	576 bp upstream
Tssr117389	transcription start site region 117389	363 bp upstream
Tssr117390	transcription start site region 117390	332 bp upstream
Tssr117391	transcription start site region 117391	310 bp upstream
Tssr117392	transcription start site region 117392	266 bp downstream
Tssr117393	transcription start site region 117393	286 bp downstream