rs6294301 SNP Detail

Summary

• ID
  rs6294301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113506498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACCACC ATGCTAGCAA
  AAGTAGATAC TTAAAAAAAA ACTAAATAAA ATTTAAATTA CTGAGTTTTC TCCACTCCCC
  ATCTTCTTGT AGTTTTCAAG TCTGTACTAA GCTAACTTCC TAAGGCTTGC TTCAGGGGGC
  TGTCTCTAGT CAGCTCTGAA ACTAATGGCA CACAAAATAG TCATAGTGGG CACTGTTGGG
  R
  AAAAGAAAGA ACCTAGGCTT GGGAACCACG AGATTTAGCT TAAAGTCATG AATTGTCATC
  ATCCATTACT ATTACGGAAC TCTGTTAAAG TCTCAGTTTC TATAAAATGA GGACAGTATC
  AACCACATTG AGTTGCTTTT TGGTTTTAAA TAAATTAACA AATGTTAAGT CCTTATCATT
  GTACCTGCTT AGAATGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8700196	WI_WGS_6_114440451	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6294301					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113506498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17849	CpG island 17849	1740 bp proximal
Emc3	ER membrane protein complex subunit 3	within coordinates
Gm55775	predicted gene, 55775	863 bp upstream
Tssr62457	transcription start site region 62457	1964 bp downstream