rs6294961 SNP Detail

Summary

• ID
  rs6294961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113506639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTAGTC AGCTCTGAAA
  CTAATGGCAC ACAAAATAGT CATAGTGGGC ACTGTTGGGA AAAAGAAAGA ACCTAGGCTT
  GGGAACCACG AGATTTAGCT TAAAGTCATG AATTGTCATC ATCCATTACT ATTACGGAAC
  TCTGTTAAAG TCTCAGTTTC TATAAAATGA GGACAGTATC AACCACATTG AGTTGCTTTT
  Y
  GGTTTTAAAT AAATTAACAA ATGTTAAGTC CTTATCATTG TACCTGCTTA GAATGTTTCA
  TAAAGCTGGC TTATTATTAT TATTGCTGTT GTTATTATTA TTATCAGCAG CAGAATAAGG
  AAAGACAAAA AAAAAAAAAA AAAAAAAGAC AATCGAAAAT ACCCAAGCTG GACATTTTGG
  GGGACAGACT CTCATGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8700858	WI_WGS_6_114440592	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6294961					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113506639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17849	CpG island 17849	1599 bp proximal
Emc3	ER membrane protein complex subunit 3	Intron
Gm55775	predicted gene, 55775	1004 bp upstream
Rr636540	regulatory region 636540	1964 bp proximal
Tssr58227	transcription start site region 58227	1997 bp upstream
Tssr62457	transcription start site region 62457	1823 bp downstream
Tssr62458	transcription start site region 62458	1897 bp downstream