rs6295124 SNP Detail

Summary

• ID
  rs6295124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51182835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACTTTCC TGTTTCCCAC
  AGCTCCTAAG TCACTTTAAG ATAAAGCCAA CATTACCTCT CCTCCTTGGT TCCGGGCAAA
  ATCGCTGCTT TCTGAATGAT TTCCTCTCCC TTCTTTAAAG TGCCCGCAGA AGGGAGAACT
  CTGCCCCAAG CCCTGCCAGC AACTTATGAC TTTATAAATT GCCACCCACT ATCCTTTGTC
  R
  GCTCCCTAAA GGTCAGCAGC TGAACTGTGA ATACCCCAAC CCACTGCCAC TTCTATTGGG
  AAGAATAAAC CACAAGCCAT GACCAGAAAA CCAAAAATCC CTGAAAGACC TTTGAGGAGC
  TCACAGGCTA TGTGCTTACT AATAGAGATA GATCTCTGAG GAAGCAGCCA TACCCCTCCC
  CAACCCCCAG GATTGCTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8701021	WI_WGS_11_51703349	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6295124					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51182835 () rs orientation: forward

Symbol	Name	Function Class
Col23a1	collagen, type XXIII, alpha 1	within coordinates
Cpgi2834	CpG island 2834	1078 bp distal
Tssr101278	transcription start site region 101278	1997 bp downstream