rs6295368 SNP Detail

Summary

• ID
  rs6295368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12772838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGAGGC TTGAGGCATC
  AAGTTGGCTT GAGCCCAGGC GCTCAGGGAT ACCCTAGGCA ACACATCGAG ACTCTTGTTC
  CTTAAAATAG ATTTCTATTG TGCAACAGGC TGTGAGCAAC TGTGTAGTTC TAGGGTCCAA
  GGTGGACGTG GGTATAGGAC TCATAACTGC GGCTTAGAGA ACAGCAGAAG TGGCATTGGC
  Y
  CTCTCGAGTG GCATTGTGCC TCTCGATTGG CTTATGTTGA GTGAGCTTAG GGTGCTTGGG
  AGGCAGAAGG AAATAGCTCA GGATGGGTCA GTGACTTCAG GCTGTCATCT AGGAATCCAG
  CCGAAGCCAG AGTCTAAATG CTTCTTGTTG CTTGTCTGGT CACAGCTTGA AAAACATGGC
  CAGAACAGGT TCGGACTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8701265	WI_WGS_7_9154618	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6295368					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12772838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	108 bp distal
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	397 bp downstream
Rr642445	regulatory region 642445	923 bp distal
Rr642446	regulatory region 642446	1245 bp distal
Rr642447	regulatory region 642447	649 bp distal
Rr642448	regulatory region 642448	146 bp distal
Rr642449	regulatory region 642449	855 bp proximal
Tssr64535	transcription start site region 64535	1211 bp downstream
Tssr64536	transcription start site region 64536	864 bp downstream
Tssr70652	transcription start site region 70652	1244 bp upstream
Tssr70653	transcription start site region 70653	1219 bp upstream
Tssr70654	transcription start site region 70654	1079 bp upstream
Tssr70655	transcription start site region 70655	960 bp upstream
Tssr70656	transcription start site region 70656	942 bp upstream
Tssr70657	transcription start site region 70657	604 bp upstream
Tssr70658	transcription start site region 70658	589 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	636 bp upstream